Run OpenSim CLI Toolchain via PhysioOpenSim

Executes OpenSim setup XML files sequentially through PhysioOpenSim.

Usage

run_opensim_toolchain(
  ik_setup = NULL,
  id_setup = NULL,
  so_setup = NULL,
  rra_setup = NULL,
  cmc_setup = NULL,
  analyze_setup = NULL,
  workdir = NULL,
  cli = NULL,
  timeout_sec = 0L,
  fail_on_error = TRUE,
  extra_args = character()
)

Arguments

ik_setup

Optional path to IK setup XML.

id_setup

Optional path to ID setup XML.

so_setup

Optional path to SO setup XML.

rra_setup

Optional path to RRA setup XML.

cmc_setup

Optional path to CMC setup XML.

analyze_setup

Optional path to Analyze setup XML.

workdir

Optional working directory for all tool runs.

cli

Optional OpenSim CLI command/path.

timeout_sec

Timeout in seconds for each tool execution.

fail_on_error

If TRUE, abort when any tool returns non-zero status.

extra_args

Optional character vector appended to every tool run.

Value

Named list with entries for tools that were executed (ik, id, so, rra, cmc, analyze).

Details

Requires a native OpenSim installation and tool setup XML files, so the example cannot run offline and is not executed.

See also

batch_analyze_opensim(), create_schema_from_opensim()

Examples

if (FALSE) { # \dontrun{
# Requires a native OpenSim installation and OpenSim setup XML files.
run_opensim_toolchain(ik_setup = "ik_setup.xml")
} # }