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Run OpenSim CLI Toolchain via PhysioOpenSim

run_opensim_toolchain.Rd

Executes OpenSim setup XML files sequentially through PhysioOpenSim.

Usage

run_opensim_toolchain(
  ik_setup = NULL,
  id_setup = NULL,
  so_setup = NULL,
  rra_setup = NULL,
  cmc_setup = NULL,
  analyze_setup = NULL,
  workdir = NULL,
  cli = NULL,
  timeout_sec = 0L,
  fail_on_error = TRUE,
  extra_args = character()
)

Arguments

ik_setup

Optional path to IK setup XML.

id_setup

Optional path to ID setup XML.

so_setup

Optional path to SO setup XML.

rra_setup

Optional path to RRA setup XML.

cmc_setup

Optional path to CMC setup XML.

analyze_setup

Optional path to Analyze setup XML.

workdir

Optional working directory for all tool runs.

cli

Optional OpenSim CLI command/path.

timeout_sec

Timeout in seconds for each tool execution.

fail_on_error

If TRUE, abort on non-zero exit status.

extra_args

Optional character vector appended to each tool run.

Value

Named list with entries for executed tools (ik, id, so, rra, cmc, analyze).

See also

batch_analyze_opensim(), create_schema_from_opensim()