Package index • PhysioIO

All functions

attachBIDSPhysio(): Attach a physio recording to a main recording as an aligned stream
bdfTriggerEvents(): Extract trigger events from a BioSemi Status channel
connectDatabase() disconnectDatabase(): Lightweight database interface
dbStats(): Get database statistics
deleteExperiment(): Delete experiment from database
downloadPhysioNet(): Download a WFDB record from PhysioNet
fromMNE(): Convert an MNE-Python Raw object to a PhysioExperiment
hasMNE(): Is the Python mne module available?
initPhysioSchema(): DuckDB Schema Management for PhysioExperiment
isHDF5Backed(): Check if assays are HDF5-backed
listBIDSSessions(): List sessions for a subject in BIDS dataset
listBIDSSubjects(): List subjects in a BIDS dataset
listWFDBRecords(): List the records in a WFDB RECORDS file
loadExperiment(): Load experiment from database
mapClinicalCodes(): Harmonize clinical codes across sites
pyMNEVersion(): Version of the available Python mne module
queryExperiments(): Query experiments from database
readBDF(): Read BDF (BioSemi Data Format) file
readBDFStatus(): Read the BioSemi Status channel of a BDF file
readBIDS(): BIDS Format Support for PhysioExperiment
readBIDSDerivatives(): Read the derivative recordings of a subject
readBIDSMotion(): Read a Motion-BIDS recording
readBIDSPhysio(): Read a BIDS continuous physiological recording
readBrainVision(): BrainVision File Format I/O for PhysioExperiment
readCSV(): CSV/TSV I/O for PhysioExperiment
readClinicalMetadataCSV(): Clinical metadata CSV I/O and validation
readEDF(): EDF/EDF+ file I/O
readElectrodePositionsCSV(): Read electrode positions from CSV
readEventsCSV(): Read events from CSV/TSV file
readFIF(): Read an Elekta/Neuromag/MNE FIF (FIFF) file
readGDF(): GDF (General Data Format) File I/O for PhysioExperiment
readMAT(): Read PhysioExperiment from MATLAB .mat file
readParquet(): Read a PhysioExperiment from a Parquet dataset directory
readPhysioHDF5(): Read PhysioExperiment from HDF5
readProv(): Read a W3C PROV interchange file back into a provenance table
readWFDB(): Read a WFDB record
readWFDBAnnotation(): Read a WFDB annotation file
realizeHDF5(): Realize HDF5-backed data to memory
registerExperiment(): Register a PhysioExperiment in the database
registerParquetAssay(): Register a Parquet-backed assay as a DuckDB view for out-of-core queries
toMNE(): Convert a PhysioExperiment to an MNE-Python RawArray
validateBIDS(): Validate BIDS dataset structure
validateClinicalMetadata(): Validate clinical metadata
writeAssayHDF5(): Write assay to HDF5 file
writeBDF(): Write BDF (BioSemi Data Format) file
writeBIDS(): Write PhysioExperiment to BIDS format
writeBIDSDerivative(): Write a BIDS derivative recording
writeBIDSMotion(): Write a Motion-BIDS recording
writeBIDSPhysio(): Write a BIDS continuous physiological recording
writeBrainVision(): Write PhysioExperiment to BrainVision format
writeCSV(): Write PhysioExperiment to CSV file
writeEDF(): Write EDF file
writeElectrodePositionsCSV(): Write electrode positions to CSV
writeEventsCSV(): Write events to CSV file
writeGDF(): Write PhysioExperiment to GDF format
writeMAT(): Write PhysioExperiment to MATLAB .mat file
writeParquet(): Write a PhysioExperiment to a Parquet dataset directory
writePhysio() readPhysio(): Basic read/write helpers
writePhysioHDF5(): HDF5 Backend for PhysioExperiment
writeProv(): Serialize a provenance trail to a W3C PROV interchange file
writeWFDB(): Write a WFDB record
writeWFDBAnnotation(): Write a WFDB annotation file