Compare EMG and MSK Communities

Detects functional communities from EMG coherence and compares them with structural communities from the MSK network.

Usage

emgCommunityCompare(pe, hg = NULL, gamma = 4.3, mapping = NULL)

Arguments

pe

A SummarizedExperiment-like object or numeric signal matrix.

hg

An MSKHypergraph object (NULL loads default).

gamma

Resolution parameter for MSK community detection (default: 4.3).

mapping

Optional data.frame from emgToMSKMapping().

Value

A list with:

emg_communities

Named integer vector of EMG community assignments

msk_communities

Named integer vector of MSK community assignments

z_rand

z-Rand score comparing the two partitions

mapping

The channel-to-muscle mapping used