Package index • PhysioMSKNet

All functions

MSKHypergraph(): Create MSK Hypergraph Object
calibrateEMGDrivenModel(): Calibrate an EMG-driven model to measured joint moments
defaultMusclePath(): Build a linear muscle-path model from the moment-arm lookup
degreeDistribution(): Degree Distribution
emgCommunityCompare(): Compare EMG and MSK Communities
emgDrivenForce(): EMG-driven muscle force
emgDrivenForceElastic(): EMG-driven force with a compliant tendon
emgDrivenJointMoment(): EMG-driven joint moment
emgDrivenParams(): Default EMG-driven muscle parameters
emgMSKEnrichment(): EMG Activation Enrichment by MSK Community
emgStructuralCoherence(): Compare EMG Coherence with MSK Structural Connectivity
emgToExcitation(): EMG envelope to neural excitation
emgToMSKMapping(): Map EMG Channels to MSK Muscles
equilibriumFiberLength(): Equilibrium fiber length with a compliant tendon
excitationToActivation(): Excitation-to-activation dynamics
forceLengthActive(): Active force-length multiplier
forceLengthPassive(): Passive force-length multiplier
forceVelocity(): Force-velocity multiplier
hillMuscleForce(): Hill-type muscle force
hyperedgeDegree(): Hyperedge (Muscle) Degree
imuCommunityDynamics(): IMU-based Community Dynamics
imuImpactPrediction(): IMU-based Impact Prediction
imuNetworkKinematics(): IMU-based Network Kinematics Analysis
imuToMSKMapping(): Map IMU Sensor Placements to MSK Bones
loadIncidenceMatrix(): Load Incidence Matrix
loadMSKData(): Load MSK Network Data
loadMuscleMetadata(): Load Muscle Metadata
loadValidationData(): Load Validation Data
mocapCommunityDynamics(): Within vs Between Community Movement Synchrony
mocapImpactPrediction(): Kinematic Stress-based Impact Prediction
mocapNetworkKinematics(): Compute Kinematic Coupling vs MSK Structure
mocapToMSKMapping(): Map MoCap Segments to MSK Bones
momentArm(): Muscle moment arms
mskAdaptProtocol(): Adapt Rehabilitation Protocol Based on Reassessment
mskAnnotate(): Annotate MSK Hypergraph with Knowledge Graph Data
mskBetweenness(): Betweenness Centrality via BFS
mskClinicalEvidence(): Map Injured Muscles to Clinical Codes and Evidence
mskClinicalPredictor(): Clinical Prediction from MSK Network Topology
mskCloseness(): Closeness Centrality
mskCommunityDetect(): Community Detection on MSK Network
mskCommunityProfile(): Profile a MSK Community's Functional Characteristics
mskCompensationEvolution(): Track Compensation Pattern Evolution Over Time
mskCompensationNetwork(): Build Compensation Network
mskCompensationRiskScore(): Compensation Risk Score
mskCompensationSummary(): Comprehensive Compensation Analysis Summary
mskConsensusPartition(): Consensus Partition
mskCoordinationQualityScore(): Compute Coordination Quality Score
mskDetectCompensation(): Detect Compensatory Activation Patterns
mskDetectRecoveryPlateau(): Detect Recovery Plateau in Longitudinal Data
mskDetectResponderStatus(): Classify Muscles as Responders, Non-Responders, or Deteriorated
mskEnrichKG(): Functional Enrichment of Muscles via Knowledge Graph
mskFunctionalMilestones(): Generate Functional Milestones for Rehabilitation
mskHomuncCorrelation(): Homunculus Correlation Analysis
mskImpactDeviation(): Compute Impact Deviation
mskImpactRecoveryModel(): Impact-Recovery Prediction Model
mskImpactScore(): Compute Impact Score for One Muscle
mskImpactScoreAll(): Compute Impact Scores for All Muscles
mskInjuryRiskProfile(): Patient-specific Injury Risk Profile
mskKGSummary(): KG-Enriched Summary of MSK Network
mskLinkOutcomeMeasure(): Link a network-derived outcome prediction to a clinical outcome measure
mskLongitudinalTracker(): Track Longitudinal MSK Metrics Across Timepoints
mskMinimalDetectableChange(): Compute Minimal Detectable Change from Longitudinal Tracker
mskModularity(): Compute Modularity
mskNetworkMetrics(): MSK Network Metrics
mskNeuralAdaptationIndex(): Compute Neural Adaptation Index Across Timepoints
mskNullEnsemble(): Generate Null Hypergraph Ensemble
mskNullHypergraph(): Generate Null Hypergraph
mskOutcomeConfidenceInterval(): Confidence Intervals for Outcome Predictions
mskOutcomeReport(): Comprehensive Outcome Report
mskOutcomeSummary(): MSK Outcome Summary Report
mskPathwayQuery(): Query Anatomical Pathway Between Entities
mskPredictFunctionalOutcome(): Predict Functional Outcome from MSK Network Analysis
mskReassess(): Reassess Patient Progress
mskRecoveryTimeline(): Recovery Timeline with Phase Assignment
mskRecoveryTrajectoryFit(): Fit Recovery Trajectory to Longitudinal Activation Data
mskRehabProtocol(): Rehabilitation Protocol Based on Network Topology
mskReproducePaper(): Reproduce Paper Results
mskRobustRegression(): Robust Regression for MSK Data
mskShortestPaths(): Shortest Path Distances
mskSimulate(): Simulate MSK Network Dynamics
mskSynergyChangeIndex(): Compute Synergy Change Index Between Two Timepoints
mskZRand(): Adjusted Rand Index (z-score)
musclePath(): Define a polynomial muscle-tendon path model
muscleTendonKinematics(): Muscle-tendon length, velocity and moment arms from joint angles
neuromechCorticomuscularCoupling(): Corticomuscular Coherence in MSK Network Context
neuromechDirectionalCoupling(): Directional Cortico-Muscular Coupling
neuromechElectromechanicalDelay(): Electromechanical Delay via Cross-Correlation
neuromechIntegratedVulnerability(): Integrated Neuromechanical Vulnerability
neuromechJointTorque(): Joint Torque Modeling in MSK Context
neuromechMotorDriveTopography(): Motor Drive Topography
neuromechMuscleSynergy(): Muscle Synergy Decomposition in MSK Context
neuromechSummary(): Neuromechanics Summary
opensimCompareModels(): Compare Multiple OpenSim Models
opensimForceToImpact(): OpenSim Force-weighted Impact Analysis
opensimNetworkAnalysis(): Full Network Analysis on OpenSim Model
opensimToMSKHypergraph(): Build MSKHypergraph from OpenSim Model
plotCommunityStructure(): Plot Community Structure
plotDegreeDistribution(): Plot Degree Distribution
plotHomunculus(): Plot Homunculus Correspondence
plotImpactVsDegree(): Plot Impact Score vs Degree
plotImpactVsRecovery(): Plot Impact Deviation vs Recovery Time
plotMSKNetwork(): Plot MSK Network
projectBoneGraph(): Project to Bone-centric Graph
projectMuscleGraph(): Project to Muscle-centric Graph
tendonForceLength(): Tendon force-length curve
vertexDegree(): Vertex (Bone) Degree