Community Detection on MSK Network — mskCommunityDetect • PhysioMSKNet

Detects communities in the projected muscle-muscle graph using the Louvain algorithm with a resolution parameter gamma.

Usage

mskCommunityDetect(hg = NULL, gamma = 4.3, type = c("muscle", "bone"))

Arguments

hg: An MSKHypergraph object. If NULL, loads built-in data.
gamma: Resolution parameter for modularity (default: 4.3, as in paper). Higher values produce more, smaller communities.
type: Projection type: "muscle" (default, as in paper) or "bone".

Value

A list with:

membership: Named integer vector of community assignments
n_communities: Number of communities detected
modularity: Modularity value Q
gamma: Resolution parameter used
sizes: Table of community sizes

References

Murphy AC et al. (2018) PLOS Biology 16(1): e2002811.