KG-Enriched Summary of MSK Network

Produces a comprehensive summary of the MSK network annotated with knowledge graph data. Profiles all communities, identifies cross-community nerve pathways, and summarizes annotation coverage.

Usage

mskKGSummary(hg = NULL, hub = NULL, gamma = 4.3)

Arguments

hg

An MSKHypergraph object (NULL loads default).

hub

A PhysioAnnotationHub object (NULL loads default).

gamma

Numeric, resolution parameter for community detection (default: 4.3).

Value

An S3 object of class "MSKKGSummary" with:

hg

Annotated MSKHypergraph

community_profiles

List of MSKCommunityProfile objects

n_communities

Number of detected communities

cross_community_nerves

Data frame of nerves spanning communities

annotation_coverage

Annotation match statistics

Clinical Validity

This is a summary tool combining network topology with knowledge graph annotations. Community boundaries and annotation mappings are model-derived. Use as a research exploration tool, not for clinical decision-making.

Examples

if (FALSE) { # \dontrun{
summary <- mskKGSummary()
print(summary)
} # }