Package index
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PhysioNIRSPhysioNIRS-package - PhysioNIRS: governed NIRS data and SNIRF input/output
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dpf() - Estimate a differential pathlength factor
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extinctionCoefficients() - Get governed haemoglobin extinction coefficients
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identifyShortChannels() - Identify short source-detector channels
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intensityToOD() - Convert continuous-wave fNIRS intensity to optical density
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mbll() - Convert optical density to haemoglobin concentration change
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measurementList() - Return the governed SNIRF measurement list
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motionArtifactDetect() - Detect fNIRS motion artifacts by channel
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nirsActivationContrast() - Contrast of an fNIRS activation GLM
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nirsActivationGLM() - First-level fNIRS cortical-activation GLM
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nirsNeurofeedbackStart()nirsNeurofeedbackStep()nirsNeurofeedbackState()nirsNeurofeedbackStop()nirsNeurofeedbackScope() - Control and inspect live NIRS neurofeedback
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nirsNeurofeedback() - Construct a governed live fNIRS neurofeedback controller
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physiologyBandpass() - Extract an explicit fNIRS physiology frequency band
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print(<NIRSNeurofeedback>) - Display a governed NIRS neurofeedback runtime
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print(<nirs_quality>) - Display a governed NIRS quality result
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pruneChannels() - Mark or drop channels using governed NIRS quality results
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readSNIRF() - Read a Shared Near Infrared Spectroscopy Format file
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scalpCouplingIndex() - Calculate the governed fNIRS scalp-coupling index
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shortSeparationDesign() - Construct a governed short-separation nuisance design
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shortSeparationRegress() - Regress governed short-separation nuisance signals
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signalQualityIndex() - Calculate governed fNIRS signal quality
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sourceDetectorDistances() - Calculate source-detector distances for each SNIRF measurement
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splineMotionCorrect() - Correct detected fNIRS motion intervals with cubic smoothing splines
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tddr() - Repair fNIRS motion artifacts with TDDR
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waveletMotionCorrect() - Correct fNIRS motion with a shift-invariant db2 wavelet transform
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writeSNIRF() - Write a Shared Near Infrared Spectroscopy Format file