Package index • PhysioAnalysis

All functions

adjacencyMatrix(): Create adjacency matrix from connectivity
anovaEpochs(): ANOVA across conditions
averageEpochs(): Average epochs
bandPower(): Compute band power
betweennessCentrality(): Compute betweenness centrality
binarizeNetwork(): Binarize network
bootstrapCI(): Bootstrap confidence interval for ERP
cliffsDelta(): Cliff's delta for two independent samples
clusterPermutationTest(): Cluster-based permutation test
clusteringCoefficient(): Compute clustering coefficient
coherence(): Connectivity Analysis for PhysioExperiment
connectivityMatrix(): Compute connectivity matrix for a frequency band
correctPValues(): Multiple comparison correction
correlationMatrix(): Compute correlation matrix between channels
crossSpectrum(): Compute cross-spectral density
effectSize(): Compute effect size (Cohen's d / Hedges g)
eigenvectorCentrality(): Compute eigenvector centrality
epochData(): Epoching operations for PhysioExperiment
epochSliding(): Create epochs using sliding window
epochTimes(): Get epoch time vector
fftSignals(): Fast Fourier transform helper
findSignificantWindows(): Find significant time windows
functionalMixedModel(): Functional random-intercept (multilevel) model for waveforms
functionalRegression(): Function-on-scalar regression (coefficient curves)
globalEfficiency(): Compute global efficiency
grandAverage(): Grand average across subjects/samples
graphLaplacian(): Compute graph Laplacian
hilbertTransform(): Hilbert transform for instantaneous amplitude/phase
instantaneousAmplitude(): Extract instantaneous amplitude (envelope)
instantaneousPhase(): Extract instantaneous phase
localEfficiency(): Compute local efficiency
modularity(): Compute network modularity
networkBasedStatistic(): Network-Based Statistic (NBS)
nodeDegree(): Compute node degree
pathLength(): Compute shortest path length
pli(): Compute Phase Lag Index (PLI)
plotAdjacencyMatrix(): Plot adjacency matrix heatmap
plotDynamicConnectivity(): Plot dynamic connectivity
plotERP(): Plot event-related potential (ERP) waveform
plotMultiChannel(): Multi-channel visualization functions
plotNBSnetwork(): Plot a significant NBS subnetwork
plotNetwork(): Network Visualization for PhysioExperiment
plotNetworkMetrics(): Plot network metrics
plotNetworkStability(): Plot network stability over time
plotPSD(): Plot power spectral density
plotSPM(): Plot SPM result
plotSignal(): Plot a signal channel
plotSpecparam(): Plot a specparam model fit
plotSpectrogram(): Plot spectrogram
plotTopomap(): Topographic Map Visualization
plotTopomapSeries(): Plot topographic map animation
plv(): Compute Phase Locking Value (PLV)
rankBiserial(): Rank-biserial correlation for two independent samples
scalarOnFunctionRegression(): Scalar-on-function regression (functional coefficient)
slidingWindowConnectivity(): Sliding window connectivity
smallWorldness(): Compute small-worldness
specparam() print(<specparam_result>): Spectral parameterization (specparam / FOOOF)
specparamBiomarker(): Aperiodic parameter as a PhysioBiomarker
spectralClustering(): Spectral clustering of network nodes
spectralDecomposition(): Spectral decomposition of graph Laplacian
spectrogram(): Time-Frequency Analysis for PhysioExperiment
spmAnova(): SPM ANOVA (F-test)
spmMANOVA(): SPM one-way MANOVA (Hotelling's T^2 / chi-square vector field)
spmPairedTTest(): SPM paired t-test
spmRegression(): SPM linear-regression t-field
spmSnPM(): Non-parametric (permutation) SPM
spmTTest(): Statistical Parametric Mapping (SPM1D) for Biomechanics
tTestEpochs(): Statistical Testing for PhysioExperiment
temporalStability(): Compute temporal stability of network
tfce(): Threshold-Free Cluster Enhancement (TFCE)
thresholdNetwork(): Threshold network by density
wPLI(): Compute weighted Phase Lag Index (wPLI)
waveletTransform(): Wavelet transform